CerebralWeb: A cytoscape.js plug-in to visualize networks stratified by subcellular localization

Silvia Frias, Kenneth Bryan, Fiona S L Brinkman, David J. Lynn

Research output: Contribution to journalArticle

5 Citations (Scopus)

Abstract

CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb. com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources.

Original languageEnglish
Article numberbav041
JournalDatabase
Volume2015
DOIs
Publication statusPublished - 1 Jan 2015

ASJC Scopus subject areas

  • Information Systems
  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

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