• 47674 Citations
  • 68 h-Index

Research output per year

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Personal profile

Public Profile

Mark Jenkinson is Professor of Neuroimaging at both the University of Adelaide and the University of Oxford. He has considerable research experience in medical image analysis, particularly human brain imaging using Magnetic Resonance Imaging (MRI), as well as machine learning and statistics. In the University of Oxford he has run the structural image analysis group in the FMRIB Centre since 2003, and in 2019 he was appointed to a 0.5 FTE position with South Australian Health and Medical Research Institute (SAHMRI), the Australian Machine Learning Institute (AIML and the University of Adelaide, alongside his 0.5 FTE position at the University of Oxford. Prof. Jenkinson has a strong track record of developing world-leading image analysis methodology and is a co-founder and the principal developer of the FSL software package, which is the most widely used software package covering the analysis of structural, diffusion and functional MR images of the brain, being used in over 2000 laboratories worldwide. He has been an investigator in major UK and international projects, with total awards over $100 million, and including the largest and most cutting-edge multimodal neuroimaging datasets ever assembled – the UK Biobank and the NIH Human Connectome Project. He has over 200 publications with more than 35,000 citations in the last 5 years (and with over 55,000 lifetime citations). Professor Jenkinson is an invited member of international standardisation committees (INCF Human Atlas Working Group and the NIH Data Format Working Group), co-editor and author of a series of textbooks on neuroimaging analysis, and has been recognized for his work in neuroimaging research by numerous awards, including a David Phillips Fellowship and a member of the highly cited researchers list for five years.

Education/Academic qualification

PhD, University of Oxford

30 Sep 199530 Oct 1999

Bachelor of Science (Honours), University of Adelaide

1 Mar 19891 Dec 1994

Bachelor's Degree (Honours), University of Adelaide

1 Mar 19891 Dec 1993

External positions

Professor of Neuroimaging, University of Adelaide

18 Mar 2019 → …

Professor of Neuroimaging, University of Oxford

1 Jul 2014 → …


  • neuroimaging
  • image analysis
  • machine learning
  • medical imaging

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Research Output

Cross-species cortical alignment identifies different types of anatomical reorganization in the primate temporal lobe

Eichert, N., Robinson, E. C., Bryant, K. L., Jbabdi, S., Jenkinson, M., Li, L., Krug, K., Watkins, K. E. & Mars, R. B., Mar 2020, In : eLife. 9, e53232.

Research output: Contribution to journalArticle

One-year changes in brain microstructure differentiate preclinical Huntington's disease stages

Pflanz, C. P., Charquero-Ballester, M., Majid, D. S. A., Winkler, A. M., Vallée, E., Aron, A. R., Jenkinson, M. & Douaud, G., 1 Jan 2020, In : NeuroImage: Clinical. 25, 102099.

Research output: Contribution to journalArticle

Quantitative susceptibility mapping for characterization of intraplaque hemorrhage and calcification in carotid atherosclerotic disease

Wang, C., Zhang, Y., Du, J., Huszár, I. N., Liu, S., Chen, Y., Buch, S., Wu, F., Liu, Y., Jenkinson, M., Hsu, C. C. T., Fan, Z., Haacke, E. M. & Yang, Q., 1 Jan 2020, In : Journal of Magnetic Resonance Imaging.

Research output: Contribution to journalArticle

Alteration to hippocampal volume and shape confined to cannabis dependence: a multi-site study

Chye, Y., Lorenzetti, V., Suo, C., Batalla, A., Cousijn, J., Goudriaan, A. E., Jenkinson, M., Martin-Santos, R., Whittle, S., Yücel, M. & Solowij, N., Jul 2019, In : Addiction Biology. 24, 4, p. 822-834 13 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework

Saillant, A., Armstrong, I., Shah, V., Zuehlsdorff, S., Hayden, C., Declerck, J., Saint, K., Memmott, M., Jenkinson, M. & Chappell, M. A., May 2019, In : IEEE Transactions on Medical Imaging. 38, 5, p. 1216-1226 11 p., 8540030.

Research output: Contribution to journalArticle

2 Citations (Scopus)