Research Output per year
Personal profile
Research Interests
Research Focus
As leader of the SAHMRI Bioinformatics Core, my group develops computational tools and workflows to enable researchers to analyse large genomics datasets, as well as working with SAHMRI research groups as a Bioinformatics consultant. Our group’s current research interests include developing methods for clinical cancer sequencing (in collaboration with the Leukaemia research group) and investigating epigenetic and structural gene regulation using multi-omic datasets, with a primary focus on reproductive systems such as the human placenta and early adaptive immune network.
Education/Academic qualification
PhD, Murdoch University
Keywords
- RG Gynecology and obstetrics
- Reproductive Biology
- QH426 Genetics
- Genomics
- RC0254 Neoplasms. Tumors. Oncology (including Cancer)
- Cancer Biology
- QA76 Computer software
- Bioinformatics
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output 2007 2019
Ceasing exercise induces depression-like, anxiety-like, and impaired cognitive-like behaviours and altered hippocampal gene expression
Morgan, J. A., Singhal, G., Corrigan, F., Jaehne, E. J., Jawahar, M. C., Breen, J., Pederson, S. & Baune, B. T., 1 Jan 2019, In : Brain Research Bulletin.Research output: Contribution to journal › Article
1
Citation
(Scopus)
Phototactic tails: Evolution and molecular basis of a novel sensory trait in sea snakes
Crowe-Riddell, J. M., Simões, B. F., Partridge, J. C., Hunt, D. M., Delean, S., Schwerdt, J. G., Breen, J., Ludington, A., Gower, D. J. & Sanders, K. L., 1 Jan 2019, In : Molecular Ecology.Research output: Contribution to journal › Article
1
Citation
(Scopus)
Transcript abundance of stromal and thecal cell related genes during bovine ovarian development
Hatzirodos, N., Hummitzsch, K., Irving-Rodgers, H. F., Breen, J., Perry, V. E. A., Anderson, R. A. & Rodgers, R. J., 1 Mar 2019, In : PLoS ONE. 14, 3, e0213575.Research output: Contribution to journal › Article
1
Citation
(Scopus)
Ancient plant DNA in the genomic era
Estrada, O., Breen, J., Richards, S. M. & Cooper, A., 1 Jul 2018, In : Nature Plants. 4, 7, p. 394-396 3 p.Research output: Contribution to journal › Review article
Specific growth conditions induce a Streptococcus pneumoniae non-mucoidal, small colony variant and determine the outcome of its co-culture with Haemophilus influenzae
Tikhomirova, A., Trappetti, C., Standish, A. J., Zhou, Y., Breen, J., Pederson, S., Zilm, P. S., Paton, J. C. & Kidd, S. P., 1 Jan 2018, In : Pathogens and Disease. 76, 7, fty074.Research output: Contribution to journal › Article