• 759 Citations
  • 13 h-Index
20072019
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Personal profile

Research Interests

Research Focus 

As leader of the SAHMRI Bioinformatics Core, my group develops computational tools and workflows to enable researchers to analyse large genomics datasets, as well as working with SAHMRI research groups as a Bioinformatics consultant. Our group’s current research interests include developing methods for clinical cancer sequencing (in collaboration with the Leukaemia research group) and investigating epigenetic and structural gene regulation using multi-omic datasets, with a primary focus on reproductive systems such as the human placenta and early adaptive immune network. 

Education/Academic qualification

PhD, Murdoch University

Keywords

  • RG Gynecology and obstetrics
  • Reproductive Biology
  • QH426 Genetics
  • Genomics
  • RC0254 Neoplasms. Tumors. Oncology (including Cancer)
  • Cancer Biology
  • QA76 Computer software
  • Bioinformatics

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Research Output 2007 2019

  • 759 Citations
  • 13 h-Index
  • 27 Article
  • 4 Review article
  • 1 Comment/debate

Ceasing exercise induces depression-like, anxiety-like, and impaired cognitive-like behaviours and altered hippocampal gene expression

Morgan, J. A., Singhal, G., Corrigan, F., Jaehne, E. J., Jawahar, M. C., Breen, J., Pederson, S. & Baune, B. T., 1 May 2019, In : Brain Research Bulletin. 148, p. 118-130 13 p.

Research output: Contribution to journalArticle

Haemoglobin expression in in vivo murine preimplantation embryos suggests a role in oxygen-regulated gene expression

Lim, M., Brown, H. M., Kind, K. L., Breen, J., Anastasi, M. R., Ritter, L. J., Tregoweth, E. K., Dinh, D. T., Thompson, J. G. & Dunning, K. R., 1 Jan 2019, In : Reproduction, Fertility and Development. 31, 4, p. 724-734 11 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Phototactic tails: Evolution and molecular basis of a novel sensory trait in sea snakes

Crowe-Riddell, J. M., Simões, B. F., Partridge, J. C., Hunt, D. M., Delean, S., Schwerdt, J. G., Breen, J., Ludington, A., Gower, D. J. & Sanders, K. L., 1 Apr 2019, In : Molecular Ecology. 28, 8, p. 2013-2028 16 p.

Research output: Contribution to journalArticle

The effects of short-term and long-term environmental enrichment on locomotion, mood-like behavior, cognition and hippocampal gene expression

Singhal, G., Morgan, J., Jawahar, M. C., Corrigan, F., Jaehne, E. J., Toben, C., Breen, J., Pederson, S. M., Hannan, A. J. & Baune, B. T., 5 Aug 2019, In : Behavioural Brain Research. 368, 111917.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Transcript abundance of stromal and thecal cell related genes during bovine ovarian development

Hatzirodos, N., Hummitzsch, K., Irving-Rodgers, H. F., Breen, J., Perry, V. E. A., Anderson, R. A. & Rodgers, R. J., 1 Mar 2019, In : PLoS ONE. 14, 3, e0213575.

Research output: Contribution to journalArticle