Research output per year
Research output per year
Personal profile
Research Interests
Research Focus
As leader of the SAHMRI Bioinformatics Core, my group develops computational tools and workflows to enable researchers to analyse large genomics datasets, as well as working with SAHMRI research groups as a Bioinformatics consultant. Our group’s current research interests include developing methods for clinical cancer sequencing (in collaboration with the Leukaemia research group) and investigating epigenetic and structural gene regulation using multi-omic datasets, with a primary focus on reproductive systems such as the human placenta and early adaptive immune network.
Education/Academic qualification
PhD, Murdoch University
Award Date: 18 Sep 2010
Keywords
- Reproductive Biology
- Genomics
- Cancer Biology
- Bioinformatics
Network
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Research output
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The mTORC1 complex in pre-osteoblasts regulates whole-body energy metabolism independently of osteocalcin
Tangseefa, P., Martin, S. K., Chin, P. Y., Breen, J., Mah, C. Y., Baldock, P. A., Wittert, G. A., Page, A. J., Proud, C. G., Fitter, S. & Zannettino, A. C. W., Dec 2021, In: Bone Research. 9, 1, 10.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Wine Terroir and the Soil Bacteria: An Amplicon Sequencing–Based Assessment of the Barossa Valley and Its Sub-Regions
Zhou, J., Cavagnaro, T. R., De Bei, R., Nelson, T. M., Stephen, J. R., Metcalfe, A., Gilliham, M., Breen, J., Collins, C. & López, C. M. R., 7 Jan 2021, In: Frontiers in Microbiology. 11, 597944.Research output: Contribution to journal › Article › peer-review
Open Access -
Effects of aging on the motor, cognitive and affective behaviors, neuroimmune responses and hippocampal gene expression
Singhal, G., Morgan, J., Jawahar, M. C., Corrigan, F., Jaehne, E. J., Toben, C., Breen, J., Pederson, S. M., Manavis, J., Hannan, A. J. & Baune, B. T., 6 Apr 2020, In: Behavioural Brain Research. 383, 112501.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D
Kennedy, S. A., Jarboui, M. A., Srihari, S., Raso, C., Bryan, K., Dernayka, L., Charitou, T., Bernal-Llinares, M., Herrera-Montavez, C., Krstic, A., Matallanas, D., Kotlyar, M., Jurisica, I., Curak, J., Wong, V., Stagljar, I., LeBihan, T., Imrie, L., Pillai, P., Lynn, M. A. & 21 others, , 24 Jan 2020, In: Nature communications. 11, 1, p. 499Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
High-risk B-cell acute lymphoblastic leukaemia presenting with hypereosinophilia and acquiring a novel PAX5 fusion on relapse
McClure, B. J., Heatley, S. L., Rehn, J., Breen, J., Sutton, R., Hughes, T. P., Suppiah, R., Revesz, T., Osborn, M., White, D., Yeung, D. T. & White, D. L., 1 Oct 2020, In: British Journal of Haematology. 191, 2, p. 301-304 4 p.Research output: Contribution to journal › Letter › peer-review
Open Access