Research output per year
Research output per year
Personal profile
Research Interests
Research Focus
As leader of the SAHMRI Bioinformatics Core, my group develops computational tools and workflows to enable researchers to analyse large genomics datasets, as well as working with SAHMRI research groups as a Bioinformatics consultant. Our group’s current research interests include developing methods for clinical cancer sequencing (in collaboration with the Leukaemia research group) and investigating epigenetic and structural gene regulation using multi-omic datasets, with a primary focus on reproductive systems such as the human placenta and early adaptive immune network.
Education/Academic qualification
PhD, Murdoch University
Award Date: 18 Sep 2010
Keywords
- Reproductive Biology
- Genomics
- Cancer Biology
- Bioinformatics
Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Acquired JAK2 mutations confer resistance to JAK inhibitors in cell models of acute lymphoblastic leukemia
Downes, C. E. J., McClure, B. J., Bruning, J. B., Page, E., Breen, J., Rehn, J., Yeung, D. T. & White, D. L., 10 Aug 2021, In: NPJ precision oncology. 5, 1, p. 75Research output: Contribution to journal › Article › peer-review
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A novel GSN variant outside the G2 calcium-binding domain associated with Amyloidosis of the Finnish type
Mullany, S., Souzeau, E., Klebe, S., Zhou, T., Knight, L. S. W., Qassim, A., Berry, E. C., Marshall, H., Hussey, M., Dubowsky, A., Breen, J., Hassall, M. M., Mills, R. A., Craig, J. E. & Siggs, O. M., Jul 2021, In: Human mutation. 42, 7, p. 818-826 9 p.Research output: Contribution to journal › Article › peer-review
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Childhood and Early Onset Glaucoma Classification and Genetic Profile in a Large Australasian Disease Registry
Knight, L. S. W., Ruddle, J. B., Taranath, D. A., Goldberg, I., Smith, J. E. H., Gole, G., Chiang, M. Y., Willett, F., D'Mellow, G., Breen, J., Qassim, A., Mullany, S., Elder, J. E., Vincent, A. L., Staffieri, S. E., Kearns, L. S., Mackey, D. A., Luu, S., Siggs, O. M., Souzeau, E. & 1 others, , 2021, (Accepted/In press) In: Ophthalmology.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Parental bias in expression and interaction of genes in the equine placenta
Dini, P., Kalbfleisch, T., Uribe-Salazar, J. M., Carossino, M., El-Sheikh Ali, H., Loux, S. C., Esteller-Vico, A., Norris, J. K., Anand, L., Scoggin, K. E., Rodriguez Lopez, C. M., Breen, J., Bailey, E., Daels, P. & Ball, B. A., 20 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 16, e2006474118.Research output: Contribution to journal › Article › peer-review
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The mTORC1 complex in pre-osteoblasts regulates whole-body energy metabolism independently of osteocalcin
Tangseefa, P., Martin, S. K., Chin, P. Y., Breen, J., Mah, C. Y., Baldock, P. A., Wittert, G. A., Page, A. J., Proud, C. G., Fitter, S. & Zannettino, A. C. W., Dec 2021, In: Bone Research. 9, 1, 10.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus)
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Australian Bioinformatics & Computational Biology Society National Conference 2021
Jimmy Breen (Participant)
21 Nov 2021 → 26 Nov 2021Activity: Participating in or organising an event › Organising a conference
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Australian Bioinformatics and Computational Biology Society (ABACBS) 2020 National Conference
Jimmy Breen (Participant)
24 Nov 2020 → 26 Nov 2020Activity: Participating in or organising an event › Organising a conference
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MRFF - Medical Research Future Fund (External organisation)
Jimmy Breen (Member)
1 May 2020 → 1 Jul 2020Activity: Membership › Membership of funding review panel
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Australian Bioinformatics and Computational Biology Society (ABACBS) (External organisation)
Jimmy Breen (Chair)
26 Nov 2018 → …Activity: Membership › Membership of committee