Research output per year
Research output per year
Personal profile
Research Interests
Research Focus
As leader of the SAHMRI Bioinformatics Core, my group develops computational tools and workflows to enable researchers to analyse large genomics datasets, as well as working with SAHMRI research groups as a Bioinformatics consultant. Our group’s current research interests include developing methods for clinical cancer sequencing (in collaboration with the Leukaemia research group) and investigating epigenetic and structural gene regulation using multi-omic datasets, with a primary focus on reproductive systems such as the human placenta and early adaptive immune network.
Education/Academic qualification
PhD, Murdoch University
Award Date: 18 Sep 2010
Keywords
- Reproductive Biology
- Genomics
- Cancer Biology
- Bioinformatics
Network
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Research output
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3DFAACTS-SNP: Using regulatory T cell-specific epigenomics data to uncover candidate mechanisms of Type-1 diabetes (T1D) risk
Liu, N., Sadlon, T., Wong, Y. Y., Pederson, S., Breen, J. & Barry, S. C., 5 Sep 2020, In: Unknown Journal.Research output: Contribution to journal › Article › peer-review
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Dicistronic tRNA-mRNA transcripts in grapevine (Vitis vinifera) display distinct, regional expression patterns that correlate with tRNA expression.
Fabres, P. J., Sai, N., Pederson, S., Zheng, F., Breen, J., Gilliham, M., Tricker, P., Rodríguez López, C. M. & David, R., 13 Apr 2020, In: Unknown Journal.Research output: Contribution to journal › Article › peer-review
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Effects of aging on the motor, cognitive and affective behaviors, neuroimmune responses and hippocampal gene expression
Singhal, G., Morgan, J., Jawahar, M. C., Corrigan, F., Jaehne, E. J., Toben, C., Breen, J., Pederson, S. M., Manavis, J., Hannan, A. J. & Baune, B. T., 6 Apr 2020, In: Behavioural Brain Research. 383, 112501.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D
Kennedy, S. A., Jarboui, M. A., Srihari, S., Raso, C., Bryan, K., Dernayka, L., Charitou, T., Bernal-Llinares, M., Herrera-Montavez, C., Krstic, A., Matallanas, D., Kotlyar, M., Jurisica, I., Curak, J., Wong, V., Stagljar, I., LeBihan, T., Imrie, L., Pillai, P., Lynn, M. A. & 21 others, , 24 Jan 2020, In: Nature communications. 11, 1, p. 499Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Genomic evolutionary analysis in R with geaR
Ward, C. M., Ludington, A. J., Breen, J. & Baxter, S. W., 7 Aug 2020, In: Unknown Journal.Research output: Contribution to journal › Article › peer-review