• 686 Citations
  • 11 h-Index
20152020

Research output per year

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Research Output

  • 686 Citations
  • 11 h-Index
  • 18 Article
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Article
2020

Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease

Ryan, F., Ahern, A. M., Fitzgerald, R. S., Laserna-Mendieta, E. J., Power, E. M., Clooney, A. G., O’Donoghue, K. W., McMurdie, P. J., Iwai, S., Crits-Christoph, A., Sheehan, D., Moran, C., Flemer, B., Zomer, A. L., Fanning, A., O’Callaghan, J., Walton, J., Temko, A., Stack, W., Jackson, L. & 6 othersJoyce, S. A., Melgar, S., DeSantis, T. Z., Bell, J. T., Shanahan, F. & Claesson, M. J., 1 Dec 2020, In : Nature communications. 11, 1, 1512.

Research output: Contribution to journalArticle

2019

Application of machine learning techniques for creating urban microbial fingerprints

Ryan, F., 16 Aug 2019, In : Biology Direct. 14, 1, 13.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia

Ryan, F., Drew, D. P., Douglas, C., Leong, L. E. X., Moldovan, M., Lynn, M., Fink, N., Sribnaia, A., Penttila, I., McPhee, A. J., Collins, C., Makrides, M., Gibson, R., Rogers, G. & Lynn, D., 29 Oct 2019, In : mSystems. 4, 5, e00484.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Choice of assembly software has a critical impact on virome characterisation

Sutton, T. D. S., Clooney, A. G., Ryan, F., Ross, R. P. & Hill, C., 28 Jan 2019, In : Microbiome. 7, 1, 12.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Differential gene expression in the mesocorticolimbic system of innately high- and low-impulsive rats

Moloney, G. M., van Oeffelen, W. E. P. A., Ryan, F., van de Wouw, M., Cowan, C., Claesson, M. J., Schellekens, H., Dinan, T. G. & Cryan, J. F., 17 May 2019, In : Behavioural Brain Research. 364, p. 193-204 12 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Host Microbiota Regulates Central Nervous System Serotonin Receptor 2C Editing in Rodents

Van De Wouw, M., Stilling, R. M., Peterson, V. L., Ryan, F., Hoban, A. E., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G., Cryan, J. F. & Schellekens, H., 15 Aug 2019, In : ACS Chemical Neuroscience. 10, 9, p. 3953-3960 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection

Heras, V. L., Clooney, A. G., Ryan, F., Cabrera-Rubio, R., Casey, P. G., Hueston, C. M., Pinheiro, J., Rudkin, J. K., Melgar, S., Cotter, P. D., Hill, C. & Gahan, C. G. M., 18 Jan 2019, In : Microbiome. 7, 1, 7.

Research output: Contribution to journalArticle

4 Citations (Scopus)

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

Shkoporov, A. N., Clooney, A. G., Sutton, T. D. S., Ryan, F., Daly, K. M., Nolan, J. A., McDonnell, S. A., Khokhlova, E. V., Draper, L. A., Forde, A., Guerin, E., Velayudhan, V., Ross, R. P. & Hill, C., 9 Oct 2019, In : Cell Host and Microbe. 26, 4, p. 527-541.e5

Research output: Contribution to journalArticle

19 Citations (Scopus)

Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

Clooney, A. G., Sutton, T. D. S., Shkoporov, A. N., Holohan, R. K., Daly, K. M., O'Regan, O., Ryan, F., Draper, L. A., Plevy, S. E., Ross, R. P. & Hill, C., 11 Dec 2019, In : Cell Host and Microbe. 26, 6, p. 764-778.e5

Research output: Contribution to journalArticle

3 Citations (Scopus)
2018

Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut

Guerin, E., Shkoporov, A., Stockdale, S. R., Clooney, A. G., Ryan, F., Sutton, T. D. S., Draper, L. A., Gonzalez-Tortuero, E., Ross, R. P. & Hill, C., 14 Nov 2018, In : Cell Host and Microbe. 24, 5, p. 653-664.e6

Research output: Contribution to journalArticle

23 Citations (Scopus)

Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation

Draper, L. A., Ryan, F., Smith, M. K., Jalanka, J., Mattila, E., Arkkila, P. A., Ross, R. P., Satokari, R. & Hill, C., 10 Dec 2018, In : Microbiome. 6, 1, 220.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Reproducible protocols for metagenomic analysis of human faecal phageomes

Shkoporov, A. N., Ryan, F. J., Draper, L. A., Forde, A., Stockdale, S. R., Daly, K. M., McDonnell, S. A., Nolan, J. A., Sutton, T. D. S., Dalmasso, M., McCann, A., Ross, R. P. & Hill, C., 10 Apr 2018, In : Microbiome. 6, 1, p. 68 1 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice

Stilling, R. M., Moloney, G. M., Ryan, F. J., Hoban, A. E., Bastiaanssen, T. F., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G. & Cryan, J. F., 29 May 2018, In : eLife. 7, e33070.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity

McCann, A., Ryan, F., Stockdale, S. R., Dalmasso, M., Blake, T., Anthony Ryan, C., Stanton, C., Mills, S., Ross, P. R. & Hill, C., 1 Jan 2018, In : PeerJ. 2018, 5, e4694.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2017

Tumour-associated and non-tumour-associated microbiota in colorectal cancer

Flemer, B., Lynch, D. B., Brown, J. M. R., Jeffery, I. B., Ryan, F., Claesson, M. J., O'Riordain, M., Shanahan, F. & O'Toole, P. W., 1 Apr 2017, In : Gut. 66, 4, p. 633-643 11 p.

Research output: Contribution to journalArticle

183 Citations (Scopus)
2016

Regulation of prefrontal cortex myelination by the microbiota

Hoban, A. E., Stilling, R. M., Ryan, F., Shanahan, F., Dinan, T. G., Claesson, M. J., Clarke, G. & Cryan, J. F., 5 Apr 2016, In : Translational psychiatry. 6, e774.

Research output: Contribution to journalArticle

195 Citations (Scopus)
2015

Microbes & neurodevelopment - Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala

Stilling, R. M., Ryan, F., Hoban, A. E., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G. & Cryan, J. F., 1 Nov 2015, In : Brain, Behavior, and Immunity. 50, p. 209-220 12 p.

Research output: Contribution to journalArticle

105 Citations (Scopus)

SPINGO: A rapid species-classifier for microbial amplicon sequences

Allard, G., Ryan, F., Jeffery, I. B. & Claesson, M. J., 8 Oct 2015, In : BMC Bioinformatics. 16, 1, 324.

Research output: Contribution to journalArticle

46 Citations (Scopus)