• 491 Citations
  • 9 h-Index
20152019
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Research Output 2015 2019

  • 491 Citations
  • 9 h-Index
  • 16 Article
2019

Application of machine learning techniques for creating urban microbial fingerprints

Ryan, F., 16 Aug 2019, In : Biology Direct. 14, 1, 13.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Choice of assembly software has a critical impact on virome characterisation

Sutton, T. D. S., Clooney, A. G., Ryan, F., Ross, R. P. & Hill, C., 28 Jan 2019, In : Microbiome. 7, 1, 12.

Research output: Contribution to journalArticle

Differential gene expression in the mesocorticolimbic system of innately high- and low-impulsive rats

Moloney, G. M., van Oeffelen, W. E. P. A., Ryan, F., van de Wouw, M., Cowan, C., Claesson, M. J., Schellekens, H., Dinan, T. G. & Cryan, J. F., 17 May 2019, In : Behavioural Brain Research. 364, p. 193-204 12 p.

Research output: Contribution to journalArticle

Host Microbiota Regulates Central Nervous System Serotonin Receptor 2C Editing in Rodents

Van De Wouw, M., Stilling, R. M., Peterson, V. L., Ryan, F., Hoban, A. E., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G., Cryan, J. F. & Schellekens, H., 15 Aug 2019, In : ACS Chemical Neuroscience. 10, 9, p. 3953-3960 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection

Heras, V. L., Clooney, A. G., Ryan, F., Cabrera-Rubio, R., Casey, P. G., Hueston, C. M., Pinheiro, J., Rudkin, J. K., Melgar, S., Cotter, P. D., Hill, C. & Gahan, C. G. M., 18 Jan 2019, In : Microbiome. 7, 1, 7.

Research output: Contribution to journalArticle

1 Citation (Scopus)

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

Shkoporov, A. N., Clooney, A. G., Sutton, T. D. S., Ryan, F., Daly, K. M., Nolan, J. A., McDonnell, S. A., Khokhlova, E. V., Draper, L. A., Forde, A., Guerin, E., Velayudhan, V., Ross, R. P. & Hill, C., 9 Oct 2019, In : Cell Host and Microbe. 26, 4, p. 527-541.e5

Research output: Contribution to journalArticle

2018
9 Citations (Scopus)

Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut

Guerin, E., Shkoporov, A., Stockdale, S. R., Clooney, A. G., Ryan, F., Sutton, T. D. S., Draper, L. A., Gonzalez-Tortuero, E., Ross, R. P. & Hill, C., 14 Nov 2018, In : Cell Host and Microbe. 24, 5, p. 653-664.e6

Research output: Contribution to journalArticle

11 Citations (Scopus)

Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation

Draper, L. A., Ryan, F., Smith, M. K., Jalanka, J., Mattila, E., Arkkila, P. A., Ross, R. P., Satokari, R. & Hill, C., 10 Dec 2018, In : Microbiome. 6, 1, 220.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Reproducible protocols for metagenomic analysis of human faecal phageomes

Shkoporov, A. N., Ryan, F. J., Draper, L. A., Forde, A., Stockdale, S. R., Daly, K. M., McDonnell, S. A., Nolan, J. A., Sutton, T. D. S., Dalmasso, M., McCann, A., Ross, R. P. & Hill, C., 10 Apr 2018, In : Microbiome. 6, 1, p. 68 1 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice

Stilling, R. M., Moloney, G. M., Ryan, F. J., Hoban, A. E., Bastiaanssen, T. F., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G. & Cryan, J. F., 29 May 2018, In : eLife. 7, e33070.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity

McCann, A., Ryan, F., Stockdale, S. R., Dalmasso, M., Blake, T., Anthony Ryan, C., Stanton, C., Mills, S., Ross, P. R. & Hill, C., 1 Jan 2018, In : PeerJ. 2018, 5, e4694.

Research output: Contribution to journalArticle

2017
142 Citations (Scopus)

Tumour-associated and non-tumour-associated microbiota in colorectal cancer

Flemer, B., Lynch, D. B., Brown, J. M. R., Jeffery, I. B., Ryan, F., Claesson, M. J., O'Riordain, M., Shanahan, F. & O'Toole, P. W., 1 Apr 2017, In : Gut. 66, 4, p. 633-643 11 p.

Research output: Contribution to journalArticle

2016
160 Citations (Scopus)

Regulation of prefrontal cortex myelination by the microbiota

Hoban, A. E., Stilling, R. M., Ryan, F., Shanahan, F., Dinan, T. G., Claesson, M. J., Clarke, G. & Cryan, J. F., 5 Apr 2016, In : Translational Psychiatry. 6, e774.

Research output: Contribution to journalArticle

2015
82 Citations (Scopus)

Microbes & neurodevelopment - Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala

Stilling, R. M., Ryan, F., Hoban, A. E., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G. & Cryan, J. F., 1 Nov 2015, In : Brain, Behavior, and Immunity. 50, p. 209-220 12 p.

Research output: Contribution to journalArticle

38 Citations (Scopus)

SPINGO: A rapid species-classifier for microbial amplicon sequences

Allard, G., Ryan, F., Jeffery, I. B. & Claesson, M. J., 8 Oct 2015, In : BMC Bioinformatics. 16, 1, 324.

Research output: Contribution to journalArticle