Research Output 1987 2019

2019

A network analysis of biomarkers for type 2 diabetes

Huang, T., Glass, K., Zeleznik, O. A., Kang, J. H., Ivey, K., Sonawane, A. R., Birmann, B. M., Hersh, C. P., Hu, F. B. & Tworoger, S. S., 1 Feb 2019, In : Diabetes. 68, 2, p. 281-290 10 p.

Research output: Contribution to journalArticle

Bone marrow fibrosis associated with long-term imatinib therapy: resolution after switching to a second-generation TKI

Shanmuganathan, N., Branford, S., Hughes, T. & Hiwase, D., 12 Feb 2019, In : Blood advances. 3, 3, p. 370-374 5 p.

Research output: Contribution to journalArticle

Cancer-associated fibroblasts in gastrointestinal cancer

Kobayashi, H., Enomoto, A., Woods, S. L., Burt, A. D., Takahashi, M. & Worthley, D., 1 Jan 2019, In : Nature Reviews Gastroenterology and Hepatology.

Research output: Contribution to journalReview article

Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set

del-Toro, N., Duesbury, M., Koch, M., Perfetto, L., Shrivastava, A., Ochoa, D., Wagih, O., Piñero, J., Kotlyar, M., Pastrello, C., Beltrao, P., Furlong, L. I., Jurisica, I., Hermjakob, H., Orchard, S., Porras, P., Khadake, J., Meldal, B., Panni, S., Thorneycroft, D. & 23 othersvan Roey, K., Abbani, S., Salwinski, L., Pellegrini, M., Iannuccelli, M., Licata, L., Cesareni, G., Roechert, B., Bridge, A., Ammari, M. G., McCarthy, F., Broackes-Carter, F., Campbell, N. H., Melidoni, A. N., Rodriguez-Lopez, M., Lovering, R. C., Jagannathan, S., Chen, C., Lynn, D. J., Ricard-Blum, S., Mahadevan, U., Raghunath, A. & authors, IME. C. C., 2019, In : Nature Communications. 10, 1

Research output: Contribution to journalArticle

Choice of assembly software has a critical impact on virome characterisation

Sutton, T. D. S., Clooney, A. G., Ryan, F., Ross, R. P. & Hill, C., 28 Jan 2019, In : Microbiome. 7, 1, 12.

Research output: Contribution to journalArticle

Differential gene expression in the mesocorticolimbic system of innately high- and low-impulsive rats

Moloney, G. M., van Oeffelen, W. E. P. A., Ryan, F., van de Wouw, M., Cowan, C., Claesson, M. J., Schellekens, H., Dinan, T. G. & Cryan, J. F., 17 May 2019, In : Behavioural Brain Research. 364, p. 193-204 12 p.

Research output: Contribution to journalArticle

Incidence, outcomes, and risk factors of pleural effusion in patients receiving dasatinib therapy for philadelphia chromosome-positive leukemia

Hughes, T. P., Laneuville, P., Rousselot, P., Snyder, D. S., Rea, D., Shah, N. P., Paar, D., Abruzzese, E., Hochhaus, A., Lipton, J. H. & Cortes, J. E., 2019, In : Haematologica. 104, 1, p. 93-101 9 p.

Research output: Contribution to journalArticle

Inhibition of de novo lipogenesis targets androgen receptor signaling in castration-resistant prostate cancer

Zadra, G., Ribeiro, C. F., Chetta, P., Ho, Y., Cacciatore, S., Gao, X., Syamala, S., Bango, C., Photopoulos, C., Huang, Y., Tyekucheva, S., Bastos, D. C., Tchaicha, J., Lawney, B., Uo, T., D'Anello, L., Csibi, A., Kalekar, R., Larimer, B., Ellis, L. & 12 othersButler, L. M., Morrissey, C., McGovern, K., Palombella, V. J., Kutok, J. L., Mahmood, U., Bosari, S., Adams, J., Peluso, S., Dehm, S. M., Plymate, S. R. & Loda, M., 8 Jan 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 2, p. 631-640 10 p.

Research output: Contribution to journalArticle

Loss of EfnB1 in the osteogenic lineage compromises their capacity to support hematopoietic stem/progenitor cell maintenance

Arthur, A., Nguyen, T. M., Paton, S., Zannettino, A. C. W. & Gronthos, S., 1 Jan 2019, In : Experimental Hematology. 69, p. 43-53 11 p.

Research output: Contribution to journalArticle

Macrophage-derived IL1B and TNFa regulate arginine metabolism in neuroblastoma

Fultang, L., Gamble, L. D., Gneo, L., Berry, A. M., Egan, S. A., De Bie, F., Yogev, O., Eden, G., Booth, S., Brownhill, S., Vardon, A., McConville, C. M., Cheng, P. N., Norris, M. D., Etchevers, H. C., Murray, J., Ziegler, D. S., Chesler, L., Schmidt, R., Burchill, S. A. & 3 othersHaber, M., De Santo, C. & Mussai, F., 1 Jan 2019, In : Cancer Research. 79, 3, p. 611-624 14 p.

Research output: Contribution to journalArticle

Revisiting acquired aplastic anaemia: Current concepts in diagnosis and management

on behalf of the Australian Aplastic Anaemia Registry Steering Committee, 1 Feb 2019, In : Internal Medicine Journal. 49, 2, p. 152-159 8 p.

Research output: Contribution to journalReview article

Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection

Heras, V. L., Clooney, A. G., Ryan, F., Cabrera-Rubio, R., Casey, P. G., Hueston, C. M., Pinheiro, J., Rudkin, J. K., Melgar, S., Cotter, P. D., Hill, C. & Gahan, C. G. M., 18 Jan 2019, In : Microbiome. 7, 1, 7.

Research output: Contribution to journalArticle

1 Citations (Scopus)

Subclonal evolution in disease progression from MGUS/SMM to multiple myeloma is characterised by clonal stability

Dutta, A. K., Fink, J. L., Grady, J. P., Morgan, G. J., Mullighan, C. G., To, L. B., Hewett, D. R. & Zannettino, A., 1 Feb 2019, In : Leukemia. 33, 2, p. 457-468 12 p.

Research output: Contribution to journalArticle

1 Citations (Scopus)

The contribution of respiratory microbiome analysis to a treatable traits model of care

Taylor, S. L., O'Farrell, H. E., Simpson, J. L., Yang, I. A. & Rogers, G. B., 1 Jan 2019, In : Respirology. 24, 1, p. 19-28 10 p.

Research output: Contribution to journalReview article

The Late Osteoblast/Preosteocyte Cell Line MLO-A5 Displays Mesenchymal Lineage Plasticity In Vitro and In Vivo

Yang, D., Gronthos, S., Isenmann, S., Morris, H. A. & Atkins, G. J., 17 Jan 2019, In : Stem Cells International. 10 p.

Research output: Contribution to journalArticle

Open Access
8 Citations (Scopus)

Abnormal Cell Sorting Underlies the Unique X-Linked Inheritance of PCDH19 Epilepsy

Pederick, D. T., Richards, K. L., Piltz, S. G., Kumar, R., Mincheva-Tasheva, S., Mandelstam, S. A., Dale, R. C., Scheffer, I. E., Gecz, J., Petrou, S., Hughes, J. N. & Thomas, P. Q., 3 Jan 2018, In : Neuron. 97, 1, p. 59-66.e5

Research output: Contribution to journalArticle

Accumulation of JAK activation loop phosphorylation is linked to type I JAK inhibitor withdrawal syndrome in myelofibrosis

Tvorogov, D., Thomas, D., Liau, N. P. D., Dottore, M., Barry, E. F., Lathi, M., Kan, W. L., Hercus, T. R., Stomski, F., Hughes, T., Tergaonkar, V., Parker, M. W., Ross, D. M., Majeti, R., Babon, J. J. & Lopez, A. F., 28 Nov 2018, In : Science Advances. 4, 11, eaat3834.

Research output: Contribution to journalArticle

1 Citations (Scopus)

Activating killer-cell immunoglobulin-like receptor haplotype influences clinical outcome following HLA-matched sibling haematopoietic stem cell transplantation

Heatley, S., Mullighan, C. G., Doherty, K., Danner, S., O'Connor, G. M., Hahn, U., Szer, J., Schwarer, A., Bradstock, K., Sullivan, L. C., Bardy, P. G. & Brooks, A. G., 1 Aug 2018, In : HLA. 92, 2, p. 74-82 9 p.

Research output: Contribution to journalArticle

1 Citations (Scopus)

A dual role for the N-terminal domain of the IL-3 receptor in cell signalling

Broughton, S. E., Hercus, T. R., Nero, T. L., Kan, W. L., Barry, E. F., Dottore, M., Cheung Tung Shing, K. S., Morton, C. J., Dhagat, U., Hardy, M. P., Wilson, N. J., Downton, M. T., Schieber, C., Hughes, T., Lopez, A. F. & Parker, M. W., 1 Jan 2018, In : Nature Communications. 9, 1, 386.

Research output: Contribution to journalArticle

Analysis and visualization of dynamic networks using the DyNet App for cytoscape

Salamon, J., Goenawan, I. H. & Lynn, D., 31 Aug 2018, In : Current Protocols in Bioinformatics. 30168906.

Research output: Contribution to journalArticle

Open Access
File
1 Citations (Scopus)

Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma

Gharahkhani, P., Burdon, K. P., Cooke Bailey, J. N., Hewitt, A. W., Law, M. H., Pasquale, L. R., Kang, J. H., Haines, J. L., Souzeau, E., Zhou, T., Siggs, O. M., Landers, J., Awadalla, M., Sharma, S., Mills, R. A., Ridge, B., Lynn, D., Casson, R., Graham, S. L., Goldberg, I. & 20 othersWhite, A., Healey, P. R., Grigg, J., Lawlor, M., Mitchell, P., Ruddle, J., Coote, M., Walland, M., Best, S., Vincent, A., Gale, J., RadfordSmith, G., Whiteman, D. C., Montgomery, G. W., Martin, N. G., Mackey, D. A., Wiggs, J. L., MacGregor, S., Craig, J. E. & NEIGHBORHOOD consortium, 15 Feb 2018, In : Scientific Reports. 8, 1, p. 3124

Research output: Contribution to journalArticle

An analysis of a multiple biomarker panel to better predict prostate cancer metastasis after radical prostatectomy

Zhang, A. Y., Chiam, K., Haupt, Y., Fox, S., Birch, S., Tilley, W., Butler, L. M., Knudsen, K., Comstock, C., Rasiah, K., Grogan, J., Mahon, K. L., Bianco-Miotto, T., Ricciardelli, C., Böhm, M., Henshall, S., Delprado, W., Stricker, P., Horvath, L. G. & Kench, J. G., 2018, (Accepted/In press) In : International Journal of Cancer.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Antibiotic exposure and interpersonal variance mask the effect of ivacaftor on respiratory microbiota composition

Peleg, A. Y., Choo, J. M., Langan, K. M., Edgeworth, D., Keating, D., Wilson, J., Rogers, G. B. & Kotsimbos, T., 1 Jan 2018, In : Journal of Cystic Fibrosis. 17, 1, p. 50-56 7 p.

Research output: Contribution to journalArticle

Antibiotic stewardship in aged care facilities

Rogers, G., Papanicolas, L. E. & Wesselingh, S., 1 Oct 2018, In : The Lancet Infectious Diseases. 18, 10, p. 1061-1063 3 p.

Research output: Contribution to journalComment/debate

2 Citations (Scopus)

A patient-derived explant (PDE) model of hormone-dependent cancer

Centenera, M. M., Hickey, T. E., Jindal, S., Ryan, N. K., Ravindranathan, P., Mohammed, H., Robinson, J. L., Schiewer, M. J., Ma, S., Kapur, P., Sutherland, P. D., Hoffmann, C. E., Roehrborn, C. G., Gomella, L. G., Carroll, J. S., Birrell, S. N., Knudsen, K. E., Raj, G. V., Butler, L. & Tilley, W. D., 1 Sep 2018, In : Molecular oncology. 12, 9, p. 1608-1622 15 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Barley β-glucan increases fecal bile acid excretion and short chain fatty acid levels in mildly hypercholesterolemic individuals

Thandapilly, S. J., Ndou, S. P., Wang, Y., Nyachoti, C. M. & Ames, N. P., 1 Jun 2018, In : Food and Function. 9, 6, p. 3092-3096 5 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

BCR-ABL1 genomic DNA PCR response kinetics during first-line imatinib treatment of chronic myeloid leukemia

Pagani, I. S., Dang, P., Kommers, I. O., Goyne, J. M., Nicola, M., Saunders, V. A., Braley, J., White, D. L., Yeung, D. T., Branford, S., Hughes, T. P. & Ross, D. M., 30 Nov 2018, In : Haematologica. 103, 12, p. 2026-2032 7 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut

Guerin, E., Shkoporov, A., Stockdale, S. R., Clooney, A. G., Ryan, F., Sutton, T. D. S., Draper, L. A., Gonzalez-Tortuero, E., Ross, R. P. & Hill, C., 14 Nov 2018, In : Cell Host and Microbe. 24, 5, p. 653-664.e6

Research output: Contribution to journalArticle

Blood pressure response toRAAS inhibition predicts all-cause mortality for individuals with type 1 diabetes and albuminuria

Mutter, S., Lithovius, R., Makinen, V-P. & Groop, P-H., 2018.

Research output: Contribution to conferencePoster

File

B Part of It study: a longitudinal study to assess carriage of Neisseria meningitidis in first year university students in South Australia

McMillan, M., Walters, L., Mark, T., Lawrence, A., Leong, L. E. X., Sullivan, T., Rogers, G., Andrews, R. M. & Marshall, H. S., 1 Jan 2018, (Accepted/In press) In : Human Vaccines and Immunotherapeutics.

Research output: Contribution to journalArticle

Burkholderia lata infections from intrinsically contaminated chlorhexidine Mouthwash, Australia, 2016

Leong, L. E. X., Lagana, D., Carter, G. P., Wang, Q., Smith, K., Stinear, T. P., Shaw, D., Sintchenko, V., Wesselingh, S., Bastian, I. & Rogers, G. B., 1 Nov 2018, In : Emerging Infectious Diseases. 24, 11, p. 2109-2111 3 p.

Research output: Contribution to journalLetter

5 Citations (Scopus)

Clinical and symptom scores are significantly correlated with fecal microbiota features in patients with symptomatic uncomplicated diverticular disease: A pilot study

Kvasnovsky, C. L., Leong, L. E. X., Choo, J. M., Abell, G. C. J., Papagrigoriadis, S., Bruce, K. D. & Rogers, G. B., 1 Jan 2018, In : European Journal of Gastroenterology and Hepatology. 30, 1, p. 107-112 6 p.

Research output: Contribution to journalArticle

Co-fuse: a new class discovery analysis tool to identify and prioritize recurrent fusion genes from RNA-sequencing data

Paisitkriangkrai, S., Quek, K., Nievergall, E., Jabbour, A., Zannettino, A. & Kok, C., 1 Oct 2018, In : Molecular Genetics and Genomics. 293, 5, p. 1217-1229 13 p.

Research output: Contribution to journalArticle

1 Citations (Scopus)

Country-Level Macroeconomic Indicators Predict Early Post-Allogeneic Hematopoietic Cell Transplantation Survival in Acute Lymphoblastic Leukemia: A CIBMTR Analysis

Wood, W. A., Brazauskas, R., Hu, Z. H., Abdel-Azim, H., Ahmed, I. A., Aljurf, M., Badawy, S., Beitinjaneh, A., George, B., Buchbinder, D., Cerny, J., Dedeken, L., Diaz, M. A., Freytes, C. O., Ganguly, S., Gergis, U., Almaguer, D. G., Gupta, A., Hale, G., Hashmi, S. K. & 30 othersInamoto, Y., Kamble, R. T., Adekola, K., Kindwall-Keller, T., Knight, J., Kumar, L., Kuwatsuka, Y., Law, J., Lazarus, H. M., LeMaistre, C., Olsson, R. F., Pulsipher, M. A., Savani, B. N., Schultz, K. R., Saad, A. A., Seftel, M., Seo, S., Shea, T. C., Steinberg, A., Sullivan, K., Szwajcer, D., Wirk, B., Yared, J., Yong, A., Dalal, J., Hahn, T., Khera, N., Bonfim, C., Atsuta, Y. & Saber, W., 1 Sep 2018, In : Biology of Blood and Marrow Transplantation. 24, 9, p. 1928-1935 8 p.

Research output: Contribution to journalArticle

Culture and Lentiviral Transduction of Benign Prostatic Hyperplasia (BPH) Samples

McClurg, U. L., McCracken, S. R., Butler, L., Riabowol, K. T. & Binda, O., 5 Nov 2018, In : JMIR research protocols. 8, 21

Research output: Contribution to journalArticle

5 Citations (Scopus)

Deficiency of host CD96 and PD-1 or TIGIT enhances tumor immunity without significantly compromising immune homeostasis

Harjunpää, H., Blake, S., Ahern, E., Allen, S., Liu, J., Yan, J., Lutzky, V., Takeda, K., Aguilera, A. R., Guillerey, C., Mittal, D., Li, X. Y., Dougall, W. C., Smyth, M. J. & Teng, M. W. L., 3 Jul 2018, In : OncoImmunology. 7, 7, e1445949.

Research output: Contribution to journalArticle

Dietary Gluten Intake and Risk of Microscopic Colitis Among US Women without Celiac Disease: A Prospective Cohort Study

Liu, P. H., Lebwohl, B., Burke, K. E., Ivey, K., Ananthakrishnan, A. N., Lochhead, P., Olen, O., Ludvigsson, J. F., Richter, J. M., Chan, A. T. & Khalili, H., 1 Jan 2018, (Accepted/In press) In : American Journal of Gastroenterology.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Diverse modes of clonal evolution in HBV-related hepatocellular carcinoma revealed by single-cell genome sequencing

Duan, M., Hao, J., Cui, S., Worthley, D. L., Zhang, S., Wang, Z., Shi, J., Liu, L., Wang, X., Ke, A., Cao, Y., Xi, R., Zhang, X., Zhou, J., Fan, J., Li, C. & Gao, Q., 1 Mar 2018, In : Cell Research. 28, 3, p. 359-373 15 p.

Research output: Contribution to journalArticle

Draft genome sequence of a non-O1/O139 vibrio cholerae strain isolated from a patient presenting with dysuria

Leong, L. E. X., Gordon, D. L. & Rogers, G., 26 Jul 2018, In : Microbiology Resource Announcements. 7, 3, e00883-18.

Research output: Contribution to journalArticle

DUSP10 constrains innate IL-33-mediated cytokine production in ST2hi memory-type pathogenic Th2 cells

Yamamoto, T., Endo, Y., Onodera, A., Hirahara, K., Asou, H. K., Nakajima, T., Kanno, T., Ouchi, Y., Uematsu, S., Nishimasu, H., Nureki, O., Tumes, D. J., Shimojo, N. & Nakayama, T., 1 Dec 2018, In : Nature Communications. 9, 1, 4231.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Dysregulated fibronectin trafficking by Hsp90 inhibition restricts prostate cancer cell invasion

Armstrong, H. K., Gillis, J. L., Johnson, I. R. D., Nassar, Z. D., Moldovan, M., Levrier, C., Sadowski, M. C., Chin, M. Y., Tomlinson Guns, E. S., Tarulli, G., Lynn, D. J., Brooks, D. A., Selth, L. A., Centenera, M. M. & Butler, L. M., 1 Dec 2018, In : Scientific Reports. 8, 1, 2090.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Early-life antibiotic-driven dysbiosis leads to dysregulated vaccine immune responses in mice

Lynn, M., Tumes, D., Choo, J., Sribnaia, A., Blake, S., Leong, L., Young, G., Marshall, H., Wesselingh, S., Rogers, G. & Lynn, D., 2018, In : Cell Host & Microbe . 23, p. 1-8

Research output: Contribution to journalArticle

Open Access
File
1 Citations (Scopus)

Effect of FAK inhibitor VS-6063 (defactinib) on docetaxel efficacy in prostate cancer

Lin, H. M., Lee, B. Y., Castillo, L., Spielman, C., Grogan, J., Yeung, N. K., Kench, J. G., Stricker, P. D., Haynes, A. M., Centenera, M. M., Butler, L., Shreeve, S. M., Horvath, L. G. & Daly, R. J., 1 Mar 2018, In : Prostate. 78, 4, p. 308-317 10 p.

Research output: Contribution to journalArticle

Efficacy and safety of nilotinib 300 mg twice daily in patients with chronic myeloid leukemia in chronic phase who are intolerant to prior tyrosine kinase inhibitors: Results from the Phase IIIb ENESTswift study

Hiwase, D., Tan, P., D'Rozario, J., Taper, J., Powell, A., Irving, I., Wright, M., Branford, S., Yeung, D. T., Anderson, L., Gervasio, O., Levetan, C., Roberts, W., Solterbeck, A., Traficante, R. & Hughes, T., 1 Apr 2018, In : Leukemia Research. 67, p. 109-115 7 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions

Sivade (Dumousseau), M., Alonso-López, D., Ammari, M., Bradley, G., Campbell, N. H., Ceol, A., Cesareni, G., Combe, C., De Las Rivas, J., del-Toro, N., Heimbach, J., Hermjakob, H., Jurisica, I., Koch, M., Licata, L., Lovering, R. C., Lynn, D. J., Meldal, B. H. M., Micklem, G., Panni, S. & 10 othersPorras, P., Ricard-Blum, S., Roechert, B., Salwinski, L., Shrivastava, A., Sullivan, J., Thierry-Mieg, N., Yehudi, Y., Van Roey, K. & Orchard, S., 2018, In : BMC Bioinformatics. 19, 1

Research output: Contribution to journalArticle

1 Citations (Scopus)

Enhanced multi-lineage differentiation of human mesenchymal stem/stromal cells within poly(: N -isopropylacrylamide-acrylic acid) microgel-formed three-dimensional constructs

Zhang, J., Yun, S., Bi, J., Dai, S., Du, Y., Zannettino, A. & Zhang, H., 1 Jan 2018, In : Journal of Materials Chemistry B. 6, 12, p. 1799-1814 16 p.

Research output: Contribution to journalArticle