Research Output

  • 38 Article
  • 3 Review article
  • 2 Conference contribution
  • 1 Conference article
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2020

Cross-species cortical alignment identifies different types of anatomical reorganization in the primate temporal lobe

Eichert, N., Robinson, E. C., Bryant, K. L., Jbabdi, S., Jenkinson, M., Li, L., Krug, K., Watkins, K. E. & Mars, R. B., 23 Mar 2020, In : eLife. 9

Research output: Contribution to journalArticle

2019

Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework

Saillant, A., Armstrong, I., Shah, V., Zuehlsdorff, S., Hayden, C., Declerck, J., Saint, K., Memmott, M., Jenkinson, M. & Chappell, M. A., 1 May 2019, In : IEEE Transactions on Medical Imaging. 38, 5, p. 1216-1226 11 p., 8540030.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Hippocampal volume across age: Nomograms derived from over 19,700 people in UK Biobank

Nobis, L., Manohar, S. G., Smith, S. M., Alfaro-Almagro, F., Jenkinson, M., Mackay, C. E. & Husain, M., 1 Jan 2019, In : NeuroImage: Clinical. 23, 101904.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants

Baxter, L., Fitzgibbon, S., Moultrie, F., Goksan, S., Jenkinson, M., Smith, S., Andersson, J., Duff, E. & Slater, R., 1 Feb 2019, In : NeuroImage. 186, p. 286-300 15 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Relating diffusion tensor imaging measurements to microstructural quantities in the cerebral cortex in multiple sclerosis

McKavanagh, R., Torso, M., Jenkinson, M., Kolasinski, J., Stagg, C. J., Esiri, M. M., McNab, J. A., Johansen-Berg, H., Miller, K. L. & Chance, S. A., 15 Oct 2019, In : Human Brain Mapping. 40, 15, p. 4417-4431 15 p.

Research output: Contribution to journalArticle

White matter changes in the perforant path area in patients with amyotrophic lateral sclerosis

Mollink, J., Hiemstra, M., Miller, K. L., Huszar, I. N., Jenkinson, M., Raaphorst, J., Wiesmann, M., Ansorge, O., Pallebage-Gamarallage, M. & van Cappellen van Walsum, A. M., 1 Oct 2019, In : Neuropathology and Applied Neurobiology. 45, 6, p. 570-585 16 p.

Research output: Contribution to journalArticle

2018

Association of cardiovascular risk factors with MRI indices of cerebrovascular structure and function and white matter hyperintensities in young adults

Williamson, W., Lewandowski, A. J., Forkert, N. D., Griffanti, L., Okell, T. W., Betts, J., Boardman, H., Siepmann, T., McKean, D., Huckstep, O., Francis, J. M., Neubauer, S., Phellan, R., Jenkinson, M., Doherty, A., Dawes, H., Frangou, E., Malamateniou, C., Foster, C. & Leeson, P., 21 Aug 2018, In : JAMA - Journal of the American Medical Association. 320, 7, p. 665-673 9 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project

Bozek, J., Makropoulos, A., Schuh, A., Fitzgibbon, S., Wright, R., Glasser, M. F., Coalson, T. S., O'Muircheartaigh, J., Hutter, J., Price, A. N., Cordero-Grande, L., Teixeira, R. P. A. G., Hughes, E., Tusor, N., Baruteau, K. P., Rutherford, M. A., Edwards, A. D., Hajnal, J. V., Smith, S. M., Rueckert, D. & 2 othersJenkinson, M. & Robinson, E. C., 1 Oct 2018, In : NeuroImage. 179, p. 11-29 19 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Feasibility of Diffusion Tensor and Morphologic Imaging of Peripheral Nerves at Ultra-High Field Strength

Schmid, A. B., Campbell, J., Hurley, S. A., Jbabdi, S., Andersson, J. L., Jenkinson, M., Bangerter, N. K., Bennett, D. L., Tracey, I., Frost, R. & Clare, S., 1 Dec 2018, In : Investigative Radiology. 53, 12, p. 705-713 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank

Alfaro-Almagro, F., Jenkinson, M., Bangerter, N. K., Andersson, J. L. R., Griffanti, L., Douaud, G., Sotiropoulos, S. N., Jbabdi, S., Hernandez-Fernandez, M., Vallee, E., Vidaurre, D., Webster, M., McCarthy, P., Rorden, C., Daducci, A., Alexander, D. C., Zhang, H., Dragonu, I., Matthews, P. M., Miller, K. L. & 1 othersSmith, S. M., 1 Feb 2018, In : NeuroImage. 166, p. 400-424 25 p.

Research output: Contribution to journalArticle

95 Citations (Scopus)

Multimodal surface matching with higher-order smoothness constraints

Robinson, E. C., Garcia, K., Glasser, M. F., Chen, Z., Coalson, T. S., Makropoulos, A., Bozek, J., Wright, R., Schuh, A., Webster, M., Hutter, J., Price, A., Cordero Grande, L., Hughes, E., Tusor, N., Bayly, P. V., Van Essen, D. C., Smith, S. M., Edwards, A. D., Hajnal, J. & 3 othersJenkinson, M., Glocker, B. & Rueckert, D., 15 Feb 2018, In : NeuroImage. 167, p. 453-465 13 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)

Quantifying Infarct Growth and Secondary Injury Volumes: Comparing Multimodal Image Registration Measures

Harston, G. W. J., Carone, D., Sheerin, F., Jenkinson, M. & Kennedy, J., 1 Jul 2018, In : Stroke. 49, 7, p. 1647-1655 9 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Separation of trait and state in stuttering

Connally, E. L., Ward, D., Pliatsikas, C., Finnegan, S., Jenkinson, M., Boyles, R. & Watkins, K. E., 1 Aug 2018, In : Human Brain Mapping. 39, 8, p. 3109-3126 18 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction

Makropoulos, A., Robinson, E. C., Schuh, A., Wright, R., Fitzgibbon, S., Bozek, J., Counsell, S. J., Steinweg, J., Vecchiato, K., Passerat-Palmbach, J., Lenz, G., Mortari, F., Tenev, T., Duff, E. P., Bastiani, M., Cordero-Grande, L., Hughes, E., Tusor, N., Tournier, J. D., Hutter, J. & 11 othersPrice, A. N., Teixeira, R. P. A. G., Murgasova, M., Victor, S., Kelly, C., Rutherford, M. A., Smith, S. M., Edwards, A. D., Hajnal, J. V., Jenkinson, M. & Rueckert, D., 1 Jun 2018, In : NeuroImage. 173, p. 88-112 25 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)
2017

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

Gorgolewski, K. J., Alfaro-Almagro, F., Auer, T., Bellec, P., Capotă, M., Chakravarty, M. M., Churchill, N. W., Cohen, A. L., Craddock, R. C., Devenyi, G. A., Eklund, A., Esteban, O., Flandin, G., Ghosh, S. S., Guntupalli, J. S., Jenkinson, M., Keshavan, A., Kiar, G., Liem, F., Raamana, P. R. & 9 othersRaffelt, D., Steele, C. J., Quirion, P. O., Smith, R. E., Strother, S. C., Varoquaux, G., Wang, Y., Yarkoni, T. & Poldrack, R. A., 1 Mar 2017, In : PLoS Computational Biology. 13, 3, e1005209.

Research output: Contribution to journalArticle

44 Citations (Scopus)

Brain MRI atrophy quantification in MS

Rocca, M. A., Battaglini, M., Benedict, R. H. B., De Stefano, N., Geurts, J. J. G., Henry, R. G., Horsfield, M. A., Jenkinson, M., Pagani, E. & Filippi, M., 24 Jan 2017, In : Neurology. 88, 4, p. 403-413 11 p.

Research output: Contribution to journalArticle

61 Citations (Scopus)

Denoising spinal cord fMRI data: Approaches to acquisition and analysis

Eippert, F., Kong, Y., Jenkinson, M., Tracey, I. & Brooks, J. C. W., 1 Jul 2017, In : NeuroImage. 154, p. 255-266 12 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging

Mollink, J., Kleinnijenhuis, M., Cappellen van Walsum, A. M. V., Sotiropoulos, S. N., Cottaar, M., Mirfin, C., Heinrich, M. P., Jenkinson, M., Pallebage-Gamarallage, M., Ansorge, O., Jbabdi, S. & Miller, K. L., 15 Aug 2017, In : NeuroImage. 157, p. 561-574 14 p.

Research output: Contribution to journalArticle

45 Citations (Scopus)

Quantitative assessment of the susceptibility artefact and its interaction with motion in diffusion MRI

Graham, M. S., Drobnjak, I., Jenkinson, M. & Zhang, H., 1 Oct 2017, In : PloS one. 12, 10, e0185647.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2016

Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age

Visser, E., Keuken, M. C., Forstmann, B. U. & Jenkinson, M., 1 Oct 2016, In : NeuroImage. 139, p. 324-336 13 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool

Visser, E., Keuken, M. C., Douaud, G., Gaura, V., Bachoud-Levi, A. C., Remy, P., Forstmann, B. U. & Jenkinson, M., 15 Jan 2016, In : NeuroImage. 125, p. 479-497 19 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease

Griffanti, L., Rolinski, M., Szewczyk-Krolikowski, K., Menke, R. A., Filippini, N., Zamboni, G., Jenkinson, M., Hu, M. T. M. & Mackay, C. E., 1 Jan 2016, In : NeuroImage. 124, p. 704-713 10 p.

Research output: Contribution to journalArticle

38 Citations (Scopus)

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

Miller, K. L., Alfaro-Almagro, F., Bangerter, N. K., Thomas, D. L., Yacoub, E., Xu, J., Bartsch, A. J., Jbabdi, S., Sotiropoulos, S. N., Andersson, J. L. R., Griffanti, L., Douaud, G., Okell, T. W., Weale, P., Dragonu, I., Garratt, S., Hudson, S., Collins, R., Jenkinson, M., Matthews, P. M. & 1 othersSmith, S. M., 26 Oct 2016, In : Nature Neuroscience. 19, 11, p. 1523-1536 14 p.

Research output: Contribution to journalArticle

245 Citations (Scopus)
2014

Increasing the detectability of external influence on precipitation by correcting feature location in GCMs

Levy, A. A. L., Jenkinson, M., Ingram, W., Lambert, F. H., Huntingford, C. & Allen, M., 27 Nov 2014, In : Journal of Geophysical Research Atmospheres. 119, 22, p. 12,466-12,478

Research output: Contribution to journalArticle

Study protocol: The Whitehall II imaging sub-study

Filippini, N., Zsoldos, E., Haapakoski, R., Sexton, C. E., Mahmood, A., Allan, C. L., Topiwala, A., Valkanova, V., Brunner, E. J., Shipley, M. J., Auerbach, E., Moeller, S., Uǧurbil, K., Xu, J., Yacoub, E., Andersson, J., Bijsterbosch, J., Clare, S., Griffanti, L., Hess, A. T. & 11 othersJenkinson, M., Miller, K. L., Salimi-Khorshidi, G., Sotiropoulos, S. N., Voets, N. L., Smith, S. M., Geddes, J. R., Singh-Manoux, A., Mackay, C. E., Kivimäki, M. & Ebmeier, K. P., 30 May 2014, In : BMC Psychiatry. 14, 1, 159.

Research output: Contribution to journalArticle

32 Citations (Scopus)
2013

Advances in diffusion MRI acquisition and processing in the Human Connectome Project

Sotiropoulos, S. N., Jbabdi, S., Xu, J., Andersson, J. L., Moeller, S., Auerbach, E. J., Glasser, M. F., Hernandez, M., Sapiro, G., Jenkinson, M., Feinberg, D. A., Yacoub, E., Lenglet, C., Van Essen, D. C., Ugurbil, K. & Behrens, T. E. J., 15 Oct 2013, In : NeuroImage. 80, p. 125-143 19 p.

Research output: Contribution to journalArticle

379 Citations (Scopus)

Can correcting feature location in simulated mean climate improve agreement on projected changes?

Levy, A. A. L., Ingram, W., Jenkinson, M., Huntingford, C., Hugo Lambert, F. & Allen, M., 28 Jan 2013, In : Geophysical Research Letters. 40, 2, p. 354-358 5 p.

Research output: Contribution to journalArticle

The minimal preprocessing pipelines for the Human Connectome Project

Glasser, M. F., Sotiropoulos, S. N., Wilson, J. A., Coalson, T. S., Fischl, B., Andersson, J. L., Xu, J., Jbabdi, S., Webster, M., Polimeni, J. R., Van Essen, D. C. & Jenkinson, M., 5 Oct 2013, In : NeuroImage. 80, p. 105-124 20 p.

Research output: Contribution to journalArticle

1074 Citations (Scopus)
2012

A combined post-mortem magnetic resonance imaging and quantitative histological study of multiple sclerosis pathology

Kolasinski, J., Stagg, C. J., Chance, S. A., Deluca, G. C., Esiri, M. M., Chang, E. H., Palace, J. A., McNab, J. A., Jenkinson, M., Miller, K. L. & Johansen-Berg, H., 1 Jan 2012, In : Brain. 135, 10, p. 2938-2951 14 p.

Research output: Contribution to journalArticle

85 Citations (Scopus)

Magnetic resonance imaging in late-life depression: Vascular and glucocorticoid cascade hypotheses

Sexton, C. E., Le Masurier, M., Allan, C. L., Jenkinson, M., McDermott, L., Kalu, U. G., Herrmann, L. L., Bradley, K. M., Mackay, C. E. & Ebmeier, K. P., 1 Jul 2012, In : British Journal of Psychiatry. 201, 1, p. 46-51 6 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Stimulus site and modality dependence of functional activity within the human spinal cord

Brooks, J. C. W., Kong, Y., Lee, M. C., Warnaby, C. E., Wanigasekera, V., Jenkinson, M. & Tracey, I., 2 May 2012, In : Journal of Neuroscience. 32, 18, p. 6231-6239 9 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

The effect of hypointense white matter lesions on automated gray matter segmentation in multiple sclerosis

Gelineau-Morel, R., Tomassini, V., Jenkinson, M., Johansen-Berg, H., Matthews, P. M. & Palace, J., 1 Dec 2012, In : Human Brain Mapping. 33, 12, p. 2802-2814 13 p.

Research output: Contribution to journalArticle

73 Citations (Scopus)
2011

Evaluation of registration methods on thoracic CT: The EMPIRE10 challenge

Murphy, K., Van Ginneken, B., Reinhardt, J. M., Kabus, S., Ding, K., Deng, X., Cao, K., Du, K., Christensen, G. E., Garcia, V., Vercauteren, T., Ayache, N., Commowick, O., Malandain, G., Glocker, B., Paragios, N., Navab, N., Gorbunova, V., Sporring, J., De Bruijne, M. & 34 othersHan, X., Heinrich, M. P., Schnabel, J. A., Jenkinson, M., Lorenz, C., Modat, M., McClelland, J. R., Ourselin, S., Muenzing, S. E. A., Viergever, M. A., De Nigris, D., Collins, D. L., Arbel, T., Peroni, M., Li, R., Sharp, G. C., Schmidt-Richberg, A., Ehrhardt, J., Werner, R., Smeets, D., Loeckx, D., Song, G., Tustison, N., Avants, B., Gee, J. C., Staring, M., Klein, S., Stoel, B. C., Urschler, M., Werlberger, M., Vandemeulebroucke, J., Rit, S., Sarrut, D. & Pluim, J. P. W., 1 Jan 2011, In : IEEE Transactions on Medical Imaging. 30, 11, p. 1901-1920 20 p., 5782992.

Research output: Contribution to journalArticle

266 Citations (Scopus)

Informatics and data mining tools and strategies for the human connectome project

Marcus, D. S., Harwell, J., Olsen, T., Hodge, M., Glasser, M. F., Prior, F., Jenkinson, M., Laumann, T., Curtiss, S. W. & Van Essen, D. C., 27 Jun 2011, In : Frontiers in Neuroinformatics. 5, 4.

Research output: Contribution to journalArticle

158 Citations (Scopus)
2009

Bayesian analysis of neuroimaging data in FSL.

Woolrich, M. W., Jbabdi, S., Patenaude, B., Chappell, M., Makni, S., Behrens, T., Beckmann, C., Jenkinson, M. & Smith, S. M., 1 Jan 2009, In : NeuroImage. 45, 1 Suppl

Research output: Contribution to journalArticle

1228 Citations (Scopus)

Brain surface contraction mapped in first-episode schizophrenia: A longitudinal magnetic resonance imaging study

Sun, D., Stuart, G. W., Jenkinson, M., Wood, S. J., McGorry, P. D., Velakoulis, D., Van Erp, T. G. M., Thompson, P. M., Toga, A. W., Smith, D. J., Cannon, T. D. & Pantelis, C., 1 Jan 2009, In : Molecular Psychiatry. 14, 10, p. 976-986 11 p.

Research output: Contribution to journalArticle

94 Citations (Scopus)

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M. C., Christensen, G. E., Collins, D. L., Gee, J., Hellier, P., Song, J. H., Jenkinson, M., Lepage, C., Rueckert, D., Thompson, P., Vercauteren, T., Woods, R. P., Mann, J. J. & Parsey, R. V., 1 Jul 2009, In : NeuroImage. 46, 3, p. 786-802 17 p.

Research output: Contribution to journalArticle

1319 Citations (Scopus)
2008

Brainstem functional magnetic resonance imaging: Disentangling signal from physiological noise

Harvey, A. K., Pattinson, K. T. S., Brooks, J. C. W., Mayhew, S. D., Jenkinson, M. & Wise, R. G., 1 Dec 2008, In : Journal of Magnetic Resonance Imaging. 28, 6, p. 1337-1344 8 p.

Research output: Contribution to journalArticle

96 Citations (Scopus)